MmuEX0035805 @ mm9
Exon Skipping
Gene
ENSMUSG00000034247 | Plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:MGI Symbol;Acc:MGI:2443207]
Coordinates
chr11:103226402-103229485:-
Coord C1 exon
chr11:103229422-103229485
Coord A exon
chr11:103228912-103229069
Coord C2 exon
chr11:103226402-103228307
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTCTCCACTTGTTCCTGCAGATT
3' ss Score
10.96
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTGAGCCACAGGAATTATCTCCTGGAGTCTCCACACAGATTCAGTGTTGCTGACCTCCAGCAG
Seq A exon
ATTGCAGAGGGGGTATATGAAGGGTTCCTCAAAGCCCTGATTGAATTCGCATCCCAGCATGTCTACCACTGTGACCTGTGCACCCAGCGAGGCTTCATCTGCCAGATCTGCCACCACCAGGACATCATCTTTCCCTTTGAGTTTGACACCACAGTCAG
Seq C2 exon
GTGTGCTGAATGCAGAACTGTCTTCCATCAGAGCTGCCAGGCTGTGGTGAGGAAGGGCTGTCCCCGATGTGCCCGCCGGCGCAAGTACCAGGAACAGAACGTTGTCAGTTAACCCCGCTGTCCCAACTTTCTGGGGCCATCCATCTGGGTCTGTCATTGGCCTAGGCTTCCTCTTCTCCCTATAAGGAAGACTCTCGGGTGTGCCCAGAGCTCCAGCCTACCGAGAAGGCGCAGGAAGTCCCAGTGATGCCCGAGGCCCCTCACAACCCTTCTGCTCCAAGAGGGGATCCAGCAGGTGCCTCTGCCCAGGGCCTGGCTTCCCCGGCTGTCATGGCTCCTCCGTTAGGGCTGTTCATGTGTACACTGTGGGAACGAAGCCTGGTGAGCATTGCCACCATGCTCCTGAGTAAAGGTCTAGTTTTTTTAAGGCAGGTTTTTTCCCCCTTCATAGTTAAACAGAAAATATTTTTTTATTCTTGACCTACCCAAGTCACCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034247_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(10.2=100)
A:
PF139011=DUF4206=FE(25.4=100)
C2:
PF139011=DUF4206=PD(14.6=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGAGTCTCCACACAGA
R:
GCACACCCGAGAGTCTTCCTT
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: