RnoEX0067108 @ rn6
Exon Skipping
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91451865-91455895:-
Coord C1 exon
chr10:91455832-91455895
Coord A exon
chr10:91455301-91455458
Coord C2 exon
chr10:91451865-91454558
Length
158 bp
Sequences
Splice sites
3' ss Seq
GGTCTCCACTTGCCCTGCAGATT
3' ss Score
8.91
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTAAGCCACAGGAATTACCTCTTGGAGTCTCCTCACAAATTCAGTGTTGCTGACCTCCAGCAG
Seq A exon
ATTGCAGAGGGGGTGTATGAAGGATTCCTCAAAGCCCTGATTGAATTCGCCTCCCAGCATGTCTACCACTGTGACCTGTGCACCCAGCGAGGCTTCATCTGCCAGATCTGCCACCACCAGGACATCATCTTTCCCTTTGAGTTTGACACCACAGTCAG
Seq C2 exon
GTGTGCTGAATGCAGAACTGTCTTCCATCAGAGCTGCCAGGCTGTGGTGAGGAAGGGCTGTCCCCGCTGTGCCCGCCGGCGCAAGTACCAGGAACAGAACACTGTCAGTTAGCCCTGCTGTCCTGACCTTCCAAGGCCGTCCAGCTGGTTTGTCATCGGCCTAGGCCTCTCCTCCCTGTAAGGAAGACTCTCTGGTGTGCCCAGAGCTCCAGCCTACAGAGAAGGCACAGGAAGTCGCAGTGATGCCTGTGGCCCCTCACTACCCTTGTGCTCCAGGAGAAGGAGATACACCAGGCGCCTCTCCACAGGGCCTGCTTACCCAGCTGTCATGGCACCTCCGTTAGGGCTGTTCATACACTGTTGAAACGAAGCTTGGTGAGCATGTGTAAACCATGCTCCTGAGTACAAGGTCTAGTTTTTTTAAGGTGGGTTTTCCCCCCTTCGTATTTAAACAGAAAATATTTTTTTATTCTTGACCTACCCAAATCACCCAAGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521-'25-19,'25-18,26-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(10.2=100)
A:
PF139011=DUF4206=FE(25.4=100)
C2:
PF139011=DUF4206=PD(14.6=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTGGAGTCTCCTCACA
R:
GGCACACCAGAGAGTCTTCCT
Band lengths:
248-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]