BtaEX6089420 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009987 | INTB3
Description
Bos taurus integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) (ITGB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206490]
Coordinates
chr19:47005865-47008772:+
Coord C1 exon
chr19:47005865-47005954
Coord A exon
chr19:47006664-47006798
Coord C2 exon
chr19:47008343-47008772
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCCTTTCTTGCTTAGAAA
3' ss Score
9.52
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
AACTATAGTGAGCTCATCCCAGGGACCACAGTGGGGGTTCTGTCTACTGATTCCAGCAATGTTCTCCAGCTCATTGTGGATGCTTATGGG
Seq A exon
AAAATCCGCTCTAAAGTAGAGCTGGAAGTGCGTGACCTCCCCGAAGAGCTGTCCTTATCCTTCAACGCCACATGTCTCAACAACGAAGTCATCCCAGGCCTGAAGTCTTGCGTTGGACTCAAGATTGGAGACACG
Seq C2 exon
GTGAGCTTCAGCATTGAGGCCAAAGTGCGTGGCTGTCCCCAGAAGAAGGAGAAGTCCTTCACCATCAAGCCTGTGGGCTTCAAAGACAGCCTCACCGTGCAGGTTACTTTCGACTGTGACTGTGCCTGCCAGGCCGAGGCTGAGCCTTTTAGCCACCGCTGCAACAATGGCAATGGGACCTTTGAGTGTGGGGTGTGCCGCTGTGGGCCCGGCTGGCTGGGGTCCCAGTGCGAGTGCTCAGAAGAGGACTACCGCCCCTCGCAGCAGGACGAGTGCAGCCCCCGGGAGGGCCAGCCCATCTGTAGCCAGCGGGGCGAGTGTCTCTGTGGCCAGTGCGTCTGCCACAGCAGTGACTTTGGCAAGATCACGGGCAAGTACTGTGAATGTGATGACTTCTCCTGTGTCCGCTACAAGGGGGAGATGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009987-'15-12,'15-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(6.8=100)
A:
PF0036213=Integrin_beta=FE(10.4=100)
C2:
PF0036213=Integrin_beta=PD(9.4=27.8),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGTGGGGGTTCTGTCTA
R:
ACACTCAAAGGTCCCATTGCC
Band lengths:
254-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]