GgaEX6027251 @ galGal3
Exon Skipping
Gene
ENSGALG00000000379 | F1NS08_CHICK
Description
NA
Coordinates
chr27:2218676-2220199:+
Coord C1 exon
chr27:2218676-2218765
Coord A exon
chr27:2219211-2219345
Coord C2 exon
chr27:2219770-2220199
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTTCCTCTCTGCTCTTCCAGAAA
3' ss Score
10.41
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
AATTACAGTGAGCTGATCCCAGGCACAACTGTGGGCACCTTGTCCAGAGACTCCAGCAATGTCCTGCAGCTCATCGTGGACGCCTATGGG
Seq A exon
AAAATCCGCTCCAAGGTAGAACTGGAGGTGCGTGACCTTCCTGAAGAGCTGTCCCTGTCCTTCAATGCCACCTGCCTCAACGACGAGGTCATCACTGGGCTCAAGTCCTGCATGGGGCTCAAGATTGGGGACACG
Seq C2 exon
GTGAGCTTCAGCATCGAGGCCAAGGTGCGAGGCTGCCCACAGGAGCGTCAGAAATCCTTCACCATCAAACCTGTGGGCTTCAAGGACAGCTTGACCGTGGTGGTGAACTTTGACTGCAACTGTTCCTGCGAGAGCCAGGCCGAGGCCAACAGCTCCTTCTGCAGCAAAGGCAATGGCAGCCTGGAGTGCGGGGTGTGCCGCTGCAACCCGGGGCGCCTGGGCTCACACTGCGAGTGCTCAGAGGAGGAGTACAACCCCTCAGAGCAGGACAACTGCAGCCCACAGCCAGGACAGCCCCTCTGCAGCCAGCGTGGCGAGTGCATCTGTGGGCAGTGCGTGTGCCATGGCAGTGACTTTGGCAAGGTGACGGGCAAGTACTGCGAGTGCGACGACTTCTCCTGTGTCCGCTTCAAAGGCCAGATGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(6.9=100)
A:
PF0036213=Integrin_beta=FE(10.4=100)
C2:
PF0036213=Integrin_beta=PD(9.5=27.8),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGATCCCAGGCACAAC
R:
ATTGCCTTTGCTGCAGAAGGA
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]