MmuEX6090367 @ mm9
Exon Skipping
Gene
ENSMUSG00000020689 | Itgb3
Description
integrin beta 3 [Source:MGI Symbol;Acc:MGI:96612]
Coordinates
chr11:104502315-104505319:+
Coord C1 exon
chr11:104502315-104502404
Coord A exon
chr11:104503498-104503632
Coord C2 exon
chr11:104504890-104505319
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTTACCCTCTTCTGCTCAGAAA
3' ss Score
6.39
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
AATTATAGTGAGCTCATTCCTGGGACCACAGTGGGAGTCCTGTCTGATGACTCAAGCAACGTCCTCCAGCTCATTGTTGATGCTTACGGG
Seq A exon
AAAATCCGCTCTAAAGTGGAGCTGGAAGTACGTGACCTGCCGGAAGAACTGTCACTGTCCTTCAATGCCACCTGCCTCAACAACGAGGTTATCCCGGGCCTCAAGTCTTGTGTGGGCCTCAAGATTGGAGACACG
Seq C2 exon
GTGAGCTTTAGTATCGAGGCCAAGGTGCGTGGCTGCCCCCAGGAGAAGGAGCAGTCTTTCACTATCAAGCCTGTGGGCTTTAAGGACAGCCTCACCGTCCAGGTGACCTTCGACTGTGACTGTGCCTGCCAGGCCTTTGCCCAGCCTTCCAGCCCACGCTGCAACAATGGGAACGGGACTTTTGAGTGTGGGGTGTGCCGCTGTGACCAGGGCTGGCTGGGGTCCATGTGTGAGTGCTCTGAGGAGGATTACCGACCCTCTCAGCAGGAAGAGTGCAGCCCCAAGGAGGGCCAGCCCATCTGCAGCCAGCGGGGAGAGTGCCTCTGTGGCCAGTGTGTCTGCCATAGCAGCGACTTCGGCAAGATCACTGGCAAGTACTGTGAGTGCGATGACTTCTCCTGCGTCCGCTACAAAGGGGAGATGTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020689-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(6.8=100)
A:
PF0036213=Integrin_beta=FE(10.4=100)
C2:
PF0036213=Integrin_beta=PD(9.4=27.8),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTGGGAGTCCTGTCTGA
R:
CCCACACTCAAAAGTCCCGTT
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: