DreEX6069521 @ danRer10
Exon Skipping
Gene
ENSDARG00000045070 | itgb3b
Description
integrin beta 3b [Source:ZFIN;Acc:ZDB-GENE-071207-2]
Coordinates
chr12:26351534-26358078:+
Coord C1 exon
chr12:26351534-26351623
Coord A exon
chr12:26353742-26353876
Coord C2 exon
chr12:26357652-26358078
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTATTTTGTTTCTACAACAGAAA
3' ss Score
7.12
5' ss Seq
ACCGTTAGT
5' ss Score
-0.89
Exon sequences
Seq C1 exon
AACTACAGTGAGTTGATCCCTGGCACTGCAGTGGGTACGCTGTCCGAGGACTCTCATAACGTCATCCAGCTGATCCAGGATGCGTATGCT
Seq A exon
AAACTGCGCTCTAAGGTAGAGCTGGAGCTCTTGAACGTCCCGGAAGAGCTCAGTCTAACATTTAATGCCACATGTCTCAACGGAGAGGTCATTCCTGGGCTGAGATCCTGCTCAGGCCTCAAAAGAGGAGATACC
Seq C2 exon
GTGTCCTTCAGTGTTGAAGCCCGAGCCAGAGGCTGTCCGAAGGAGAAGCGCAAAACCTTCACTATAAAACCAGTGGGCTTCAAAGACACCTTGCAGATCACAGTCAACTTTGAATGTGAGTGTAAATGCCAAGCAAAGGCTGAGCTTGAGAGTCCCGTCTGCCACCACGGCAATGGCACCTATGAGTGTGGCATCTGCCTGTGTCACCCGGGGCGGCTGGGTCCCCGCTGCGAATGTGCAGAGGGCGACTACAGCCCAACAGAACAGGACGCCTGCAGTGGGCCAGACAAGGTGATCTGCAGCGGCCGGGGAGACTGTGTGTGCGGACAGTGCGTCTGTCACAATAATGACTTCGGCAAAGTATGGGGGAAGAGATGCGAGTGTGATGATTTCAGCTGCCTGCGCTATAAAGGAGAGCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045070-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(6.8=100)
A:
PF0036213=Integrin_beta=FE(10.3=100)
C2:
PF0036213=Integrin_beta=PD(9.4=28.0),PF079748=EGF_2=WD(100=24.5),PF079748=EGF_2=PU(32.3=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTCCGAGGACTCTCATA
R:
GATGCCACACTCATAGGTGCC
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]