BtaEX6090374 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54371846-54372987:+
Coord C1 exon
chr19:54371846-54372007
Coord A exon
chr19:54372519-54372683
Coord C2 exon
chr19:54372796-54372987
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCCATCGACATCTAGGAT
3' ss Score
6.56
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GGGCTCCTGTTCTCCACCGCAGAGATCCTGAAATTCCCGCTGGACCTCGTCCGCCTCTGGCTGCACGAGGCCGAACGTGTGTACGGCGACAAGATGGTGGACGAGAAGGACCAGGACACGCTGCGCAGGGTCACCATCGCTTCCACCAAGAAGTTCTTTGAC
Seq A exon
GATCTCGGTGATGAGCTCCTATTTGCCAAACCAAACATCTTCTGCCACTTTGCTCACGGGATCGGAGACCCCAAATACCTGCCGGTGACCGACCTGGCTCCGCTGAACAAGCTTCTGGTGGAAGTCCTGGACAGTTACAATGAGGTCAACGCGGTCATGAACCTG
Seq C2 exon
GTGCTTTTCGAGGATGCGGTGGCCCACATCTGCAGGATCAACCGCATCCTGGAGTCCCCGCGGGGTAACGCCCTGCTGGTGGGGGTGGGCGGCAGCGGCAAGCAGAGCCTCTCCCGCCTGGCCGCGTACATCAGCGCCCTGGACGTGTTCCAGATTACCCTCAAGAAGGGCTACGGGATCCCAGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'52-56,'52-55,53-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.0=40.7)
A:
PF127802=AAA_8=PU(3.4=16.4)
C2:
PF127802=AAA_8=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTGGACGAGAAGGACC
R:
GGATCCCGTAGCCCTTCTTGA
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]