HsaEX6025154 @ hg19
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76471360-76472815:-
Coord C1 exon
chr17:76472654-76472815
Coord A exon
chr17:76471751-76471915
Coord C2 exon
chr17:76471360-76471551
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTCTTTTTCTAGGAT
3' ss Score
13.03
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGACTCTTATTTTCCACAGCAGAAGTTCTGAAAACCCCACTGGACCTCGTCCGCCTTTGGCTACATGAGACTGAACGAGTGTATGGTGACAAAATGGTTGACGAAAAAGACCAGGAAACATTGCATAGAGTCACCATGGCCTCCACCAAGAAGTTCTTTGAT
Seq A exon
GATCTTGGTGATGAACTCTTATTTGCCAAGCCAAATATCTTCTGCCACTTTGCTCAAGGGATTGGCGATCCCAAATATGTTCCTGTAACCGACATGGCTCCTCTGAACAAGCTCCTCGTGGACGTCCTGGACAGCTACAATGAAGTTAATGCAGTCATGAATTTG
Seq C2 exon
GTGCTGTTTGAGGACGCCGTGGCTCACATCTGCAGGATTAATCGCATCCTGGAGTCTCCCCGGGGGAATGCCCTGCTGGTGGGGGTGGGCGGCAGTGGCAAACAGAGCCTCTCCCGCCTGGCAGCGTACATCAGCGGGCTTGACGTGTTTCAGATCACCCTCAAGAAGGGCTACGGGATCCCCGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'56-58,'56-57,57-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
PF127802=AAA_8=PU(3.4=16.4)
C2:
PF127802=AAA_8=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGACGAAAAAGACCAGGA
R:
GGATCCCGTAGCCCTTCTTGA
Band lengths:
249-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)