GgaEX7009565 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10086854-10087607:+
Coord C1 exon
chr18:10086854-10087015
Coord A exon
chr18:10087147-10087311
Coord C2 exon
chr18:10087416-10087607
Length
165 bp
Sequences
Splice sites
3' ss Seq
CACTGCCATTCCTCTTCCAGGAC
3' ss Score
11.45
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GGACTGCTGTTCTCCACCCCCGAGTGCCTGCGGAGCCCCGTGGACCTGGTGAGGCTCTGGATGCACGAAGCCGAGCGGGTCTACGGGGACAAGCTTGTTGATGACAAGGATCAGAAAAGCTTTGGGAAAATGCTAACTGACACCTGCAAGAAATTCTTTGCT
Seq A exon
GACCTCAACGAAGAGACGGTGTTTGCCAAGCCCAACATCTACTGCCACTTCGCCGAGGGCATCAGGGAGCCCAAGTACCTGCCAGTGCCGAGCTGGCCATCACTCAACAAGCTGCTGGGAGAGGCCTTGGACAGCTACAATGAAGTCAATGCGGCAATGAACCTG
Seq C2 exon
GTGCTCTTTGAGGACGCAGTGTCTCACATTTGCAGAATCAGTCGGATCCTGGAGTCCCCCCGAGGCAACGCGCTGCTGGTGGGGGTGGGGGGCAGCGGGAAGCAGAGCCTTTCCCGGCTCGCTGCTTACATCAGCTCTCTAGACGTGTTTCAGATGACACTGAGGAAGGGCTATGGCATCCCAGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'57-62,'57-61,58-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
PF127802=AAA_8=PU(3.4=16.4)
C2:
PF127802=AAA_8=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGACAAGCTTGTTGATGA
R:
ATGCCATAGCCCTTCCTCAGT
Band lengths:
258-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]