BtaEX6090679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018920 | TRIM47
Description
tripartite motif containing 47 [Source:HGNC Symbol;Acc:HGNC:19020]
Coordinates
chr19:56375390-56376526:+
Coord C1 exon
chr19:56375390-56375620
Coord A exon
chr19:56375782-56375980
Coord C2 exon
chr19:56376452-56376526
Length
199 bp
Sequences
Splice sites
3' ss Seq
TGGGCATCTGTTTGGCACAGGAG
3' ss Score
3.78
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGCGCAGCCGTGGCAGAGCGGGAGAGGGTGAGCCGGCTGTTTGCCGAGGCTGCGGCCGTCCTGCAGGGGTTTCAGACCCAAGTGCTGGGCTTCATCGACGAGGGGGAGGCGACCATGCTGGGCCGCTCCCAGGGCGACCTGCGGCGGCAGGAGGAGCAGCGGAGCCGACTCAGCAGGGCCCGCCACAACCTCAGTCAGGTCCCCGAAGCCGACTCGGTCAGCTTCCTGCAG
Seq A exon
GAGCTCCTGGCACTCCGGCTGGCCCTGGAGGAGGGGTGTGGCCCTGGGCCCGGACCACCGAAGGAGCTCAGCTTCACCAAGTCCTCCCAGGCTGTGCGCGCGGTGCGAGCCGTCCTGGCTGCAGCCTGTTCCAGCCAGTGGGAGCAGCTGCGGGGGCTGGGCGGTGACGAAGACGGGCTGCAGAAGCCGGGCACGGAAG
Seq C2 exon
CAGACGCTGAGTCCCAGGACCCTGACAGCACCAACAACCTGGAGAGTGAGGCTCCTAGGGATTACTTCCTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018920-'2-4,'2-3,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=0.463 C2=0.577
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCGGGAGAGGGTGAG
R:
GTTGTTGGTGCTGTCAGGGTC
Band lengths:
256-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]