RnoEX0093684 @ rn6
Exon Skipping
Gene
ENSRNOG00000008215 | Trim47
Description
tripartite motif-containing 47 [Source:RGD Symbol;Acc:1597317]
Coordinates
chr10:104655878-104656961:-
Coord C1 exon
chr10:104656731-104656961
Coord A exon
chr10:104656372-104656570
Coord C2 exon
chr10:104655878-104655952
Length
199 bp
Sequences
Splice sites
3' ss Seq
TGCGCATTTGTCCGGCACAGGAG
3' ss Score
5.61
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGTGCAGCTGTGGCAGAGCGGGAGAGGGTGAGCCAGATGTTTGCCGAGGCCACAGCCTCCCTACAGAGTTTCCAGACTGAGGTGCTGGGGTTCATCGAGGAGGGGGAGGCCGCCATGTTGGGCCGCTCTCAAGGTGACCTGCGCAGACAAGAGGAACAGCGCAGCCGCCTAAGCCGGGCTCGCCACAACCTCAGTCAGGTTCCAGAGGCGGATTCAGTCAGCTTTCTCCAG
Seq A exon
GAGCTCCTGGCACTGCGGCTGGCCCTGGAGGAGGGGTGTGGCCCTGGGCCTGGACCCCCCAGGGAACTCAGCTTCACCAAGTCCTCCCAAGCGGTCCGAGCCGTGAGGGACATCCTTGTCTCAGCCTGTGCCAGCCAGTGGGAGCAGCTGCGGGGGCTGGGCAGTGGTGAGGATGAGCTACAGAAACTTGGCTCAGAAG
Seq C2 exon
CTGATGTGGAGTCCCAGGACCCTGACAGCACCAACCTGCTGGAGAGCGAGGCTCCCAGGGATTATTTCCTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008215-'7-5,'7-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.328 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGCCTCCCTACAGAGTT
R:
AATAATCCCTGGGAGCCTCGC
Band lengths:
248-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]