MmuEX6091347 @ mm10
Exon Skipping
Gene
ENSMUSG00000020773 | Trim47
Description
tripartite motif-containing 47 [Source:MGI Symbol;Acc:MGI:1917374]
Coordinates
chr11:116106932-116108119:-
Coord C1 exon
chr11:116107778-116108119
Coord A exon
chr11:116107424-116107622
Coord C2 exon
chr11:116106932-116107003
Length
199 bp
Sequences
Splice sites
3' ss Seq
TGGGCATTTGTCTGGCACAGGAG
3' ss Score
5.15
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAGCAGGCTGGGGCTGGGTGGGGGCTGGGTGGGCACAAGCAGTCAGGGACGGAGACAGCGGGCAGGCCCGGTCTTTGCCCTCACTGTTGTCTCCTCTGCTCTCTCCTGCAGAGTGCAGCTGTGGCAGAGCGGGAGAGGGTGAGCCAGATGTTTGCCGAGGCCACAGCCACCCTTCAGAGTTTCCAGAACGAGGTGATGGGGTTCATCGAAGAGGGAGAGGCCACAATGTTGGGCCGGTCCCAGGGTGACCTGCGTAGACAAGAGGAACAGCGCAGCCGCCTAAGCAAGGCACGGCACAACCTCGGTCAGGTTCCAGAGGCGGATTCAGTCAGCTTTCTCCAG
Seq A exon
GAGCTCCTGGCACTACGGCTGGCCCTGGAGGAGGGGTGCGGCCCCGGGCCTGGGCCCCCCAGGGAACTCAGCTTCACCAAGTCCTCCCAGGTGGTCAAAGCGGTGAGAGACACCCTCATCTCAGCCTGTGCCAGCCAGTGGGAGCAGCTGCGGGGGCTGGGCAGCAATGAGGATGGGCTACAGAAACTCGGCTCAGAAG
Seq C2 exon
ATGTGGAGTCCCAGGACCCTGACAGTACCAGCCTGCTGGAGAGTGAGGCCCCCAGGGATTACTTCCTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020773-'14-14,'14-11,15-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.381 C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGGTGAGCCAGATGTT
R:
CTGGTACTGTCAGGGTCCTGG
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types