GgaEX1060412 @ galGal4
Exon Skipping
Gene
ENSGALG00000028301 | TRIM47
Description
tripartite motif containing 47 [Source:HGNC Symbol;Acc:HGNC:19020]
Coordinates
chr18:4606669-4608187:+
Coord C1 exon
chr18:4606669-4606899
Coord A exon
chr18:4607393-4607588
Coord C2 exon
chr18:4608113-4608187
Length
196 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTCTTTTTGGCTCAGGAG
3' ss Score
7.04
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGTGTTGCCAGCAAGGAGAAGGAGCGGGTGGAGAAGCTCTTTGCAGAAGCTTCTGAGCTGCTGGCCACCTTCCAGAAGGAGGTGGCCGCCTTCATCGAGGACAGCGAGCGCTCCATGCTGGGGGAGACCGAGGCTGACCTCCGCTGGAAGGAGGAGAGGAGAGCCAAGCTGGCCCAGGGCAAGCAGAACCTGGAGAACATCCCCAGCACCGACACCATCTACTTCCTTCAG
Seq A exon
GAGTTTCAAGCCTTAAAAATAGCCATGGAAGACAACCTCTCTCCGGCTCCGAGCTTCCAGAACGAGCTCAACTTCACCAAGTGCTCCCAAGCCGTCTGCGCCGTCAAGGATGCGCTGTCAGCTGCCCGCAAAAGCCAGTGGGACTGTTTGCAGGGGAAAGGAGTGGATGGGATGAGCTTCCCGAAGACGGAGGAAG
Seq C2 exon
CAATGACCAAGTCTCAATTTCCAGACAAGTCGAACAATCCCGCCTGCCTGGAGAGCCGCGATTACTTCCTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028301_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.030 C2=0.269
Domain overlap (PFAM):
C1:
PF058526=DUF848=PD(62.2=89.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGAGAAGCTCTTTGCAG
R:
GCGGGATTGTTCGACTTGTCT
Band lengths:
249-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]