BtaEX6091081 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61918102-61919161:+
Coord C1 exon
chr19:61918102-61918177
Coord A exon
chr19:61918266-61918360
Coord C2 exon
chr19:61919042-61919161
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCGTGTTTGTCGTCCCCCAGCTG
3' ss Score
8.53
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATAACAAATGCACTTGATCTAAAAGAACACCTGCAGAAAACAGTGAAGAAACTTCCTGCAGGAATCAGGCGCAAG
Seq A exon
CTGTGTTTCGCCCTGAGCATGCTGGGGAACCCCCCGGTCACGCTGCTGGATGAGCCGTCCACAGGCATGGATCCCAAAGCCAAGCAGCACATGTG
Seq C2 exon
GAGAGCGATTAGAACCGCATTCAAAAACAGGAAGCGGGCCGCTATTCTGACCACTCACTACATGGAGGAGGCGGAGGCCGTCTGCGACCGTGTGGCCATCATGGTGTCCGGGCGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'41-42,'41-41,42-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.1=100)
A:
PF0000522=ABC_tran=PD(13.7=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTGATCTAAAAGAACACCTGC
R:
GGACACCATGATGGCCACAC
Band lengths:
175-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]