GgaEX6016392 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7969981-7970634:-
Coord C1 exon
chr18:7970559-7970634
Coord A exon
chr18:7970383-7970477
Coord C2 exon
chr18:7969981-7970100
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTCCTCCCCCTCAGCTC
3' ss Score
9.92
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CATCTCAAGTGCCCTGGATTTTAAAGACCACCTGCAGAAGACGACAAAGAAGTTGGGCGTGGGGCTGAAGCGCAAG
Seq A exon
CTCTGCTTCGCCCTGAGCATGCTGGGCAGCCCCCGCGTCACGCTGCTGGATGAGCCCTCCACCGGCATGGACCCCAAGGCCAAGCAGCGCATGTG
Seq C2 exon
GAGGGCGATCCGAGCAGCCTTCAAAAACAAGGAGCGGGCGGCCATCCTGACCACACACTACATGGAGGAGGCGGACGCGGTGTGCGACCGCGTGGCCATCCTGGTGGCCGGGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.1=100)
A:
PF0000522=ABC_tran=PD(13.7=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCAAGTGCCCTGGATTT
R:
TCCGCCTCCTCCATGTAGTG
Band lengths:
151-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]