RnoEX6050367 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98580642-98581833:-
Coord C1 exon
chr10:98581758-98581833
Coord A exon
chr10:98581548-98581642
Coord C2 exon
chr10:98580642-98580761
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTTTCTTCCTCCTAGCTG
3' ss Score
9.64
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATAACAAAAGCCCTTGATTTGAAAGAACATCTTCAGAAAACTGTAAAGAAACTCCCTGCAGGGATCAAGCGAAAG
Seq A exon
CTGTGTTTTGCTCTCAGTATGCTGGGGAATCCTCAGGTGACACTGCTGGATGAGCCGTCTACAGGTATGGACCCCAGAGCCAAACAGCACATGTG
Seq C2 exon
GCGAGCCATTCGAACTGCGTTTAAAAACAAGAAGCGGGCTGCCCTCCTCACTACGCATTACATGGAAGAGGCGGAGGCTGTCTGTGACAGGGTGGCCATCATGGTGTCCGGGCAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'40-46,'40-45,42-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.1=100)
A:
PF0000522=ABC_tran=PD(13.7=62.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTGATTTGAAAGAACATCT
R:
CATGATGGCCACCCTGTCAC
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]