BtaEX6091096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61895317-61896644:+
Coord C1 exon
chr19:61895317-61895455
Coord A exon
chr19:61895979-61896069
Coord C2 exon
chr19:61896505-61896644
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACGCCAATCTCTCTTTGCAGATA
3' ss Score
10.76
5' ss Seq
GAGGTATCG
5' ss Score
8.1
Exon sequences
Seq C1 exon
GTGCTGCTGTTGGACGAGCCAACAGCTGGAATGGACCCGTGTTCTCGTCACATTGTCTGGAATCTTCTGAAACACAGAAAAGCGAACCGGGTGACAGTGTTTAGCACTCACTTCATGGATGAAGCCGACATTCTTGCTG
Seq A exon
ATAGGAAGGCTGTCATATCACAAGGAATGTTAAAATGTGTTGGTTCTTCAATTTTTCTCAAAAGCAAATGGGGAATTGGCTACCGGCTGAG
Seq C2 exon
CATGTACATAGACAGATACTGTGCCACAGAATCTCTTTCTTCTCTGGTTAAACAACATATACCTGCGGCCACTTTGTTGCAACAGAATGAGCAGCAACTTGTGTACAGCTTGCCTTTCAAGGACATGGACAAATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'16-16,'16-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGGGTGACAGTGTTTAGC
R:
GGCAAGCTGTACACAAGTTGC
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]