DreEX0009948 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38659934-38662314:+
Coord C1 exon
chr12:38659934-38660072
Coord A exon
chr12:38660155-38660245
Coord C2 exon
chr12:38662175-38662314
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTCTGTAACACAGATC
3' ss Score
7.67
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
ATCCTCCTTTTGGATGAGCCTACAGCTGGTATGGACCCAGTGTCTCGGCACCAGGTTTGGTCTTTACTGAAGAGCCGTAGAGCAGGCAGAGTTACAGTTCTCAGCACTCACTATATGGATGAGGCTGATATACTTGCAG
Seq A exon
ATCGTAAAGCTGTCATCTCGCAAGGACAGCTCAAGTGTGTTGGCTCTTCTTTGTACCTGAAGACCAAGTGTGGAGTTGGGTATCATCTTAG
Seq C2 exon
AATGTCAGTGACTGAAGGCTGTGAGGTGGAGGGCATCACGTCGCTGGTCAAGCAGCATGTTCCCAAAGCTCAGTTGTCAAGGCAGCAAGAGGCTGAGCTTACATTCACTCTGCCTTTCGAGAGCATGGACACCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'18-21,'18-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATGGACCCAGTGTCTCG
R:
GCTTTGGGAACATGCTGCTTG
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]