GgaEX6016382 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7980037-7980851:-
Coord C1 exon
chr18:7980713-7980851
Coord A exon
chr18:7980358-7980448
Coord C2 exon
chr18:7980037-7980176
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTATTGATTTCTAGATC
3' ss Score
8.73
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTTTTGCTGCTGGATGAGCCGACAGCAGGCATGGATCCGTGCTCACGGCACATTGTCTGGAACCTGCTGAAGAACAGGAAGGCGAATTGCGTGACGGTCTTCAGCACTCACTTCATGGACGAGGCAGACATCCTTGCTG
Seq A exon
ATCGTAAAGCTGTGATTTCTCAAGGGATGCTGAAATGCCTTGGATCTTCTCTCTTTCTGAAAAGCAAATGGGGAATTGGCTACCGCTTGAG
Seq C2 exon
CATGCATATTGATGCCTACTGCAACACGGAAGCCACGACCTCACTGATCAGGCAGCATATCCCCGCAGCCAGCCTGATCCAGGAGAACACCCAGCAGCTCGTCTACACACTGCCACTCCGGGACATGGACAAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACTTCATGGACGAGGC
R:
AACTTGTCCATGTCCCGGAGT
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]