Special

BtaEX6091141 @ bosTau6

Exon Skipping

Gene
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62075151-62080753:+
Coord C1 exon
chr19:62075151-62075264
Coord A exon
chr19:62078603-62078722
Coord C2 exon
chr19:62080676-62080753
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCCCTTGCCTTGTAGGTC
3' ss Score
10.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTGTCCTGACGCTTGGTTATGCGGCTTCACTTGTCTCCCTGATGTACGTGGTAGCATTTATTTTTCGTAAGAGGAGGAAAAATAGCGGCCTTTGGTCATTTTGCTTCTATGTA
Seq A exon
GTCACGGTCATCGCATTTGGCATCATTGTGCTATTTGGCTCAGGCGTCCCTGTCCTGATACCTTGCATGGCTTTAGCTCCCTCAGCAACCTTGATTGGATTTATAGCTTTTTTGCAAGAG
Seq C2 exon
AGAATCCATCGATACTGGATAAAATATCAAGAGGCAAATTACGACCTGAGTGCAGCTGACTTTCTAGTGTGCCTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'32-30,'32-29,33-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF126982=ABC2_membrane_3=FE(10.2=100)
A:
PF126982=ABC2_membrane_3=FE(10.8=100)
C2:
PF126982=ABC2_membrane_3=FE(6.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGACGCTTGGTTATGC
R:
AGGCACACTAGAAAGTCAGCTG
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]