MmuEX6090888 @ mm10
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110190179-110196806:-
Coord C1 exon
chr11:110196693-110196806
Coord A exon
chr11:110191618-110191737
Coord C2 exon
chr11:110190179-110190256
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTTGGACTTGCCCTGTAGGTC
3' ss Score
8.21
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ATTGTTCTTGCACTTGGCTGTGCAGCCTCTCTTGTCTTCTTGACATATGTGATATCATTTGTTTTTGGCAAAAGGAAGAAAAACAGCACCCTCTGGTCAATTTGCTTCCTTCTT
Seq A exon
GTCATAGCCATTACGTTTGAAAAAGTTGCAAATGGTCCCTTCAATGAAGCACTGGTTATTTCTGCCACAATGTTAGTACCTTCCTTTGCATTGAATGGACTCCTGGTTGTCTTGGAAATG
Seq C2 exon
AGAGCCTATCAGTACTACATAGAATTTGAAGAGATTAAACATGGTTTATCTGCGGTTGATCTTCTGTTATGCCTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749-'28-36,'28-35,29-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.1=100)
A:
PF126982=ABC2_membrane_3=FE(10.7=100)
C2:
PF126982=ABC2_membrane_3=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCTTGCACTTGGCTGTG
R:
GGCATAACAGAAGATCAACCGC
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types