BtaEX6091149 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62057655-62061215:+
Coord C1 exon
chr19:62057655-62057774
Coord A exon
chr19:62059721-62059859
Coord C2 exon
chr19:62061125-62061215
Length
139 bp
Sequences
Splice sites
3' ss Seq
TATATCTTCATCCACTGTAGGTT
3' ss Score
9.28
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GTACAAAGAGTTTTACTGGAATTGGACATACAGAACATTCAGGATAATCTTGCTACACTTTTAAGTGAAGGTCAAAAAAGAAAGCTGACCATTGGGATTGCCCTTTTAGGAGATCCTCAA
Seq A exon
GTTTTGCTATTAGATGAGCCAACTGCGGGATTGGATCCTTTCTCAAGGCATCGAATATGGAACTTCCTCAGGGAGCGCAAAGCAGACCGCGTGATCCTCTTGAGCACCAACTTGATGGATGAAGCGGACATGCTGGCTG
Seq C2 exon
ATAGGAAAGTGATCCTGTCCAAAGGGAGGCTGAAGTGCGCGGGCTCGTCTGTCTTTTTGAAGCGAAGATGGGGTCTCGGCTATCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'19-14,'19-13,21-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAAGAGTTTTACTGGAATTGGA
R:
TTAGGTGATAGCCGAGACCCC
Band lengths:
210-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]