GgaEX6016338 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7954010-7955166:-
Coord C1 exon
chr18:7955047-7955166
Coord A exon
chr18:7954553-7954691
Coord C2 exon
chr18:7954010-7954100
Length
139 bp
Sequences
Splice sites
3' ss Seq
CACCTGCCCTCACCTTGCAGGTG
3' ss Score
12.72
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGCAGAAAGTCCTGGTACAGTTGGACCTCACTGACCTTCAAGATGTCCACGCTGACTCTCTGAGTGGGGGACAAAAAAGAAAGCTGTCTCTTGCAATTGCGATTTTAGGGGATCCTCAG
Seq A exon
GTGCTGCTCTTGGACGAGCCAATGGTGGGGCTGGATCCTTGCTCCAGGCACCACGTGTGGGAGCTGTTGGCGGAGCGCCGGGCTGGCCGTGTGACACTCATCTGTACACAGTCTGTGGAGGAGGCTGACGCTTGTGCTG
Seq C2 exon
ATCGAAAAGCTTTCCTTTCAAATGGGAGAGTACAGTGTGTTGGCTCATCTCTGTACTTGAAGAGAAAGTGGGGAATTGGCTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021393-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(44.8=100)
A:
PF0000522=ABC_tran=PD(9.2=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAAAGTCCTGGTACA
R:
TTAAGTGATAGCCAATTCCCCACT
Band lengths:
210-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]