BtaEX6091156 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62038515-62047093:+
Coord C1 exon
chr19:62038515-62038741
Coord A exon
chr19:62045777-62045918
Coord C2 exon
chr19:62046908-62047093
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATATTGTTTGTCTTTTTTAGGCT
3' ss Score
11.53
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGACAACAAATCACTATGTGATGGAGGAGTTGATGTCAGTTACTGCTGTAAATATGAAGACGCTCCCCTTTATCTTTAAGGAGAACCTTCAAAATGAGATGTTCATCTTTTACTGCTTGCTTTACTTCTCCCCACTTATATACTTCCTATCACTCAATGTTGCAAGAGAGAGAAAAAACTATAAGGATTTGATGAACTTGATGGGTCTGCAAGATTCAGCCTTCTG
Seq A exon
GCTCTCCTGGGGTTTAATCTATGCTGCCTTCATCTTTGTCACTTCCATAATCATCACAGTGATCATAACATCTACTGAAATTATCATCCTGACGGGCTTCACGGTCATATTTACTCTCTTTTTCTTGTATGGCTTATCCTTG
Seq C2 exon
ATCGCTTTGGCATTCCTGATGACCGTGCTGCTAAAGAAAACCATCCTCACCAGTTTGGTTGTGTTTCTCCTCACCCTCTTCTGGGGGGGTGTGGGATTCAGTGCGTTTTACCAACAACTTCCTTCACCTTTGAAGTGGATTTTCAGTATCTGTAGCCCCTTTGCCTTCAGTGCTGGAATAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'6-5,'6-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.2=100)
A:
PF126982=ABC2_membrane_3=FE(12.1=100)
C2:
PF126982=ABC2_membrane_3=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACGCTCCCCTTTATCT
R:
CCCAGAAGAGGGTGAGGAGAA
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]