RnoEX6050323 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98533254-98538297:-
Coord C1 exon
chr10:98538071-98538297
Coord A exon
chr10:98534388-98534529
Coord C2 exon
chr10:98533254-98533439
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTGTCTTTGTTTAGGCT
3' ss Score
9.83
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTCACAACAAAGCACCCTGTGATGGAGGAGTTAATGTCCGTCAACGCGTTCAATATGAAGACCTTACCTTTTATTTCTAAAGACATTTTTCAATATGAAATTTTTATCTTGTTCTGCTTGCTCTATTTCTCCTCGTTCATCTATTTTGCGTCACGCAGCGTTACTAAAGAGAGAAAGCACTCTAAGGAGTTCATGAAAGTAATGGGTCTACAAGACTCTGCATTCTG
Seq A exon
GCTGTCCTGGGGCTTAATCTATGTTGGCTTCATCTTTATTTTTTCTGTATTCATCGCCGTTATCATAACATCTACCCGGATCATAGTGATGACTGGTTTCCTCGTCATATTTACACTGTTCTTCTTGTATGGACTATCCGTG
Seq C2 exon
ATAGCTGTAACTTTCCTGATGGCTGTTCTGTTACAGAAAGCGATCATCACCAACCTATTTGTATTTCTCTTTAACCTCTTTTGGGGGTGTGTGGGGTTCACGGTGCTGCACAAAGAGCTCCCCTCATCTCTGGAATGGGTCCTGAGCATCTGTAGCCCTTTTGCCTTCACATCCGGGATGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'9-8,'9-6,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.3=100)
A:
PF126982=ABC2_membrane_3=FE(12.1=100)
C2:
PF126982=ABC2_membrane_3=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACGCAGCGTTACTAAAG
R:
GGCAAAAGGGCTACAGATGCT
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]