BtaEX6091293 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63815284-63821156:-
Coord C1 exon
chr19:63821009-63821156
Coord A exon
chr19:63816672-63816855
Coord C2 exon
chr19:63815284-63815512
Length
184 bp
Sequences
Splice sites
3' ss Seq
ATGTGTATGCTTATTTAAAGGTA
3' ss Score
6.5
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TTACACCTCTGAGCTCTTCTATGAGGGCAAGCTGATGGCCAGTGGAAAGCAACCAGCACACAAGGAGTTCTATCCACTAACCTTCTTTACAGCACGAGGGGAAGATGTACAGGAGAAAAATAGCACAGCTTTTTATAATAATGCAGAG
Seq A exon
GTATTTGAAGTGGTGGAGCGAGTGGAAGAGCTGAGAAGGAAGTGGCCAGTAGCGTGGGGCAAGTTGGATGATGGAAGTATTGGTGTGGTGACTCCATATGCAGACCAGGTGTTCAGGATACGCGCCGAACTTCGAAAAAAGAGGTTATCTGACGTTAACGTAGAAAGGGTGCTCAATGTTCAAG
Seq C2 exon
GAAAGCAATTCAGAGTTTTGTTTCTTAGCACAGTACGTACAAGGCATACTTGTAAACATAAACAGACACCAATTAAAAAGAAGGAGCAGCTGCTAGAAGACTCCACAGAGGACTTGGATTATGGCTTTTTGTCTAACTACAAGCTCCTCAACACCGCCATCACAAGAGCACAGTCCCTGGTTGCCGTGGTGGGGGACCCCATCGCTCTGTGCTCCATTGGGAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746-'49-51,'49-49,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(23.0=100)
A:
PF130871=AAA_12=FE(28.6=100)
C2:
PF130871=AAA_12=PD(31.5=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTTTACAGCACGAGGGG
R:
GGGACTGTGCTCTTGTGATGG
Band lengths:
245-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]