MmuEX0022716 @ mm9
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107499094-107510654:+
Coord C1 exon
chr11:107499094-107499241
Coord A exon
chr11:107507364-107507547
Coord C2 exon
chr11:107510426-107510654
Length
184 bp
Sequences
Splice sites
3' ss Seq
ACATGTGTGCTTGTTTAAAGGTA
3' ss Score
8.3
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTACACCTCTGAGCTTTTCTATGAGGGGAAGCTGATGGCCAGTGGGAAGCAGCCGGCGCACAAGGACTTCTATCCACTCACGTTCTTTACGGCACGGGGGGAGGACGTCCAAGAGAAGAACAGCACGGCATTCTACAACAATGCAGAG
Seq A exon
GTATTTGAAGTGGTGGAGCGTGTAGAAGAGCTAAGACGGAAGTGGCCAGTGGCATGGGGAAAGTTAGATGACGGCAGCATCGGTGTGGTGACGCCATACGCTGACCAGGTGTTTAGAATCCGAGCTGAGCTTCGGAAGAAGAGGCTCTCGGATGTGAATGTGGAAAGGGTGCTCAATGTCCAAG
Seq C2 exon
GAAAGCAGTTCAGAGTTCTGTTTCTTAGCACAGTGCGTACACGCCACACTTGCAAGCACAAGCAGACGCCAATTAAAAAGAAAGAGCAACTCCTGGAAGACTCCACCGAGGACTTAGATTATGGTTTTCTATCCAACTACAAACTTCTCAATACGGCCATCACCAGAGCACAGTCCTTGGTTGCTGTGGTGGGTGACCCTGTTGCTCTGTGCTCTATTGGAAGGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(23.0=100)
A:
PF130871=AAA_12=FE(28.6=100)
C2:
PF130871=AAA_12=PD(31.5=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGAAGAACAGCACGGCA
R:
CACAGAGCAACAGGGTCACC
Band lengths:
250-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: