GgaEX0026420 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7207319-7211200:+
Coord C1 exon
chr18:7207319-7207466
Coord A exon
chr18:7209860-7210043
Coord C2 exon
chr18:7210972-7211200
Length
184 bp
Sequences
Splice sites
3' ss Seq
AATTCTGACTTTCTTTTAAGGTG
3' ss Score
9.53
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTACACATCTGAACTTTTCTATGAAGGCAAATTGATGGCAAGTGGAAAGCAGCCAGCACACAAAGATTTCTACCCTTTAACTTTCTTCACAGCACGTGGAGAAGATGTGCAGGAAAAAAATAGTACAGCTTTTTACAATAATGCAGAG
Seq A exon
GTGTTTGAAGTAGTAGAGCGTGTTGAGGAGTTAAGAAGAAAATGGCCTGTTGCCTGGGGCAAGTTGGATGATGGCAGTATAGGTGTCGTGACACCTTATGCTGATCAGGTGTTCAGAATTCGGGCTGAACTTCGGAAAAAAAGACTGTCTGATGTCAGTGTAGAGAGAGTGCTAAACGTTCAGG
Seq C2 exon
GAAAGCAGTTTAGAGTGTTGTTTCTCAGCACAGTACGAACACGGCATACGTGCAAACATAAGCAAACACCAATTAAAAGGAAAGAGCAGTTACTCGAGGATTCAACAGAGGACTTGGATTATGGTTTCCTGTCTAATTACAAACTTCTCAATACTGCCATTACAAGAGCACAATCCTTGGTAGCTGTGGTGGGAGATCCCATTGCTTTATGTTCCATTGGAAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439_MULTIEX3-2/2=C1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(23.0=100)
A:
PF130871=AAA_12=FE(28.6=100)
C2:
PF130871=AAA_12=PD(31.5=87.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGAGAAGATGTGCAGG
R:
ATCTCCCACCACAGCTACCAA
Band lengths:
253-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]