DreEX0037286 @ danRer10
Exon Skipping
Gene
ENSDARG00000030560 | helz
Description
helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
Coordinates
chr3:60765178-60771904:+
Coord C1 exon
chr3:60765178-60765325
Coord A exon
chr3:60768077-60768260
Coord C2 exon
chr3:60771676-60771904
Length
184 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTTTCTGCAGGTG
3' ss Score
12.23
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTACACGTCGGATCTCTTCTACGAGGGGAAGCTGATGGCCAGCGGGAAACAGCCGCCACATAAGGATTTTTACCCCCTGACCTTCTTCACAGCCCGCGGAGAAGACGTGCAGGAGAAAAACAGCACAGCGTACTACAACAACGCTGAG
Seq A exon
GTGTTTGAGATCGTGGAGCGTGTGGAGGAGATGAGGAAGAAGTGGCCCGTGTCCTGGGGGAAGCTGGAGGAGGGCAGCATCGGTGTGGTTTCGCCCTACGCCGACCAGGTCTTCCGGATCAGAGCCGAACTGCGCAAAAAGAGGATGTCGGAGGTCAGCGTGGAGAGAGTGCTCAACGTGCAGG
Seq C2 exon
GTAAGCAGTTCCGGGTGCTGTTCCTGAGCACGGTGCGCACGCGTCACACCTGCAAACACAAGCAGACGGCCATCAAGAGGAAGGAGCAGCTGGTGGAGGACTCGACTGAAGATCTGGACTACGGCTTTCTGTCCAACTACAAGCTGCTGAACACCGCCATCACTCGAGCGCAGTCACTGGTGGCCGTGGTGGGAGATCCTATCGCCCTCTGCTCTGTGGGACGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030560-'21-24,'21-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(23.0=100)
A:
PF130871=AAA_12=FE(28.6=100)
C2:
PF130871=AAA_12=PD(31.5=87.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGAGGGGAAGCTGATGG
R:
TCTTCAGTCGAGTCCTCCACC
Band lengths:
243-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]