BtaEX6091525 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20719561-20745808:-
Coord C1 exon
chr24:20745594-20745808
Coord A exon
chr24:20729364-20729654
Coord C2 exon
chr24:20719561-20720441
Length
291 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTTGTCTCCCCCAGCCA
3' ss Score
10.18
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATACAAATACTTGGAGCAGTTGGCAGCTGAGGCGCATGAGAAGGAGCTGAGAAGCCGGAGTGCGAGCCGGGGCAGAGCTGACCTCTCCTTGGACCTGACCTCACCGGCAGCCCCCGCCTCCCCCGCCCCCCTGGGTCGTAGCCCTTCATCTCTAGACTCGCAGGAGGTTCCCACGGTATCATCCTCCTCCCCAGGAACGCCTCAGCATCCCCAAG
Seq A exon
CCAGCGCCGGGGAGCCTGGGCCTGAACCGGAGGCAGACGTGGAGGCAGAGGTGGGGCAGGTGGCCGATGAGGCCGGCCAGGAGCTAGCCCCTGCCAGCGCGGGAGCAGAGAGCGAGGTGGAGCGGGCCCTGGAGCCCGAGCACGAGGAGCGAGCCTCCCTGAGCGAGAAGGAGCGGCAGAATGAGGCAGTGAATGAGCGTGACAACTGCTCGGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAGGGAGGACAGGGAGGACAAGCTCTCCCGGGACAAGGGCACAG
Seq C2 exon
GTTTGTGGTCTGCGGGTGTTCAGGATGCGGGTGTAAATGAGCAGTGTGGCGACATCCTCACCAGCAAACGGTTCATGCTGGACATGCTGTATGCCCATAACAGAAAGCCCGCGGATGACGAGGAGAAAGGGGAGGGCGAGGCCGCAAGGACCGCGCAAGGGGCGGAGGCGGTAGCCAGCCTGGCCAGCAGAATATCCACCCTGCAGGCCAGTTCCCTGGCCCAGGATGAGAGCGTCAAGAGGGTGGACGTTGGTTGTCTGGACAACAGGGGCAGTGTGAAAGCCTTTGCAGAGAAATTCAACAGCGGGGACCTAGGGAGGGGGTCCGTCTCCCCTGACGCGGAGCCCAATGACAAGGTCGCAGAGAAGACATCAGCTCAGCCCAAGACGGAATCTGACTACATCTGGGACCAGCTCATGGCCAATCCCAGGGAGCTCAGAATCCAGGACATGGATTTCACTGACCTGGGTGAGGAGGACGACATTGACGTCCTGGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(17.2=21.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCGTAGCCCTTCATCTC
R:
GCCTGCAGGGTGGATATTCTG
Band lengths:
292-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]