GgaEX0019788 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85658815-85670948:+
Coord C1 exon
chr2:85658815-85659029
Coord A exon
chr2:85665800-85666105
Coord C2 exon
chr2:85670059-85670948
Length
306 bp
Sequences
Splice sites
3' ss Seq
CCTATTGTTCTCTCCACCAGTGA
3' ss Score
7.87
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATACAAATACTTGGAGAGATTGGCAGCCGAGGAGTATGAGAAGGAGCTGAAGAGTCGAAGTGTAAGCCGAGGCAGAAGTGAGCTGTCCTTGAACCTGAGATCTCCTTCAGCCCCATCCTCACCTGTACCCAAGTGCGTCAGCCCAGCATCCATAGAGTCCCAGGAAGAGCTGAAGACCCCCTCTACCCCCTGTGGAACTCCTCAGCACTCAGAAG
Seq A exon
TGAGTGCCAGTGAACCTGAACCAGAAACAGAGACAGAACCAGAAGCAGAGCAGGAGACTGAGGCAGAGCCTGAGCAGGGAACGGAGACACCCAAGGAAATAGAGGCTACAGAGGTGGGACCAGAGAGTGAGGTGGAGCAAGGACCAGAGAGAGAGCCAGAAGAAAGTGCAATACTCAGTGAAAAAGAGAGGCAGAATGAGGAAGTGAATGAAAAAGACAACTGCTCTGCATCCAGCATATCCTCAGCAAGCAGCACTTTAGAGAGGGAAGAGAGAGAGGACAAGTTAACCAGTGACAATGAAACTG
Seq C2 exon
GTCCATGGTCCCAGACCATTCAGGATGCTGGCGTGAATGAGCAGTGCAGCAAGATCCTCAACAACAAGCGGTTTATGCTGGACATGCTGTATGCGCATAACAAAAAGCCCAAGGATGAAGAGGAGAAGGAGCTGGAGGCGAAGGAGGAAAAGAAGGAGACGGAGGAAAGCGAGGAGTCCCTCACTAGTCTAGCCAGTAGGATCTCTATCCTTCAGGCCACAAAGCAGGCCAAAGATGAAAGTGTCAAAAAGATGGAGATCGGAAACCTGGACAACCAAGGCAGCGTGAAAGCCTTTGCGGAAAAATTCAACAGTGGTGAGCTGGCCAAGGGGACAGCCTTGCCTGAAGATGAAATCAGTGAACAGGTCCCTGAGAAAACACCAGCACAGCCAAAGAAGGAATCTGACTACATCTGGGATCAACTCATGGCTAATCCTAGAGAACTGAAAATCAAAGACATGGATTTTACAGACTTGGGGGAGGAGGATGATGTAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_CASSETTE2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.979 A=1.000 C2=0.726
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(17.0=21.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCATCCATAGAGTCCCA
R:
TGCCTTGGTTGTCCAGGTTTC
Band lengths:
356-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]