RnoEX6058283 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17264504-17289722:+
Coord C1 exon
chr18:17264504-17264715
Coord A exon
chr18:17282002-17282280
Coord C2 exon
chr18:17288845-17289722
Length
279 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTTGTCTCCATCAGTAA
3' ss Score
7.05
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATACAAATACTTGGAGCACTTGGCAGCCGAGGCGCACGAGAAGGAGCAGAGAAGCCGGAGCGCGAGCCGGGGCAGAGCTGACCTCTCCTTGGACCTGAGCTTGCCAGCAGCCCCTGCCTCACCTTCCCCATCAAGCCCGAGTCCTGACTCTGCTGACTCACAAGAGGCTCTCACGGTGCCCTCAACCCCACCCACCCTGCAGTACCCACAAG
Seq A exon
TAAGTGGTAAGGACCGAGAGCCTGAACTGGAGGCGGAAGCTGGGCAGGGTGCTGATGAAGCCAGCCGGGACATAGCGTCTGCCCACAGGGAAGCAGGAAGCCAAGAAGAGCCAGCGCTGGAGCTAGAGCCTGAGGAAAGAGCGTCACTGAGTGAGAAAGAGAGGCAAAACGAAGAGGTGAATGAGAGGGACAACTGTTCTGCCTCCAGCATCTCGTCCTCCAGCAGCACCTTGGAGAGGGAAGAGAAGGAGGACAAACTGTCTGGAGACAGACCAACTG
Seq C2 exon
GTTTGTGGTCTGCCAGCCTTCAGGATGTGGGTGTAAATGGACAGTGTGGTGACATCCTTACCAGCAAAAGGTTCATGCTGGACATGCTGTATGCCCATAACAGAAAGTCCACAGAAGACGAAGAGAAAGGTGATGGCGAACCTGGGAGGTCTGCACAGGAGGTGGAAGCGGTGGCCAGCCTCGCCACCAGGATCTCCACTCTGCAGGCCAACTCTCAGGCCCCGGAGGAGAGCATCAAGAGGGTGGACATTGGCTGCTTGGACAACCGGGGCAGCGTGAAGGCATTTGCCGAGAAATTCAACAGTGGAGAAGTAGGGAGAGGCTCCGTCTCTCCTGATGCTGAGTCTCAGGACAAGGTCCCGGATACACCACCAGCACAGCTGAAAACTGAGTCTGATTACATCTGGGACCAGCTCATGGCCAATCCAAGGGAGCTCAGAATCCAAGACATGGATTTTACAGACCTGGGGGAGGAGGATGATATCGATGTTCTGGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'48-41,'48-40,51-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(17.2=21.8)
Main Skipping Isoform:
ENSRNOT00000041961fB5562
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCACAAGAGGCTCTCACG
R:
ACCCTCTTGATGCTCTCCTCC
Band lengths:
302-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]