DreEX6040368 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18843211-18854497:-
Coord C1 exon
chr16:18854313-18854497
Coord A exon
chr16:18846814-18847305
Coord C2 exon
chr16:18843211-18844124
Length
492 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTATGTGATTTTCAGGAA
3' ss Score
8.84
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATACAAGCAAGTGGAGCGTCTGACAGCAGAGGAAAAAGAAAGGGAACGGCCGAGAACACGTGGTAGAACAGAAATCACCCTCAGTCTGAGTTCACGCACTTCCAGCAGCTCCTTGTCTCGTTCCGTCACCCCTTTGACTGTAGATGCTCAAGAGGAGACACGCCCTGTCTCACATACAGCACAAG
Seq A exon
GAACTGTGACTGAGAAAAGTTGTACGGTGCAGACAGCAGTTGTGCGTTCTTTATCAGAACCTCCCTCTGCATCTCCACCAGTGTCCCCATCGCAACCAGAGGAGCAACAGAGACCTGTCGACCCATCCGACATCATTCTATCTCTATCTCCAACAAACTCTGAACCAGAAAGAACAGAGAAAGGGGAGAAAAAAGAGGATGCTGAAGCAGAGGAGTGTGAGGAAACAGTGGTGGGTGAAGTGCAAGATGAAAAGAAGGAAGAACCAGAAGGAAACTTTGAGGATGAGACTAATGTGACGGGTGCAGAAGACTGTGAGAGGGAGAAGACGTTGGATAGAGAAGTAGAGGAGAGTGCCATCCTAAGTGAAAAGGAGAAGCAGAATGAAGAACTGAATGAGAAAGATAACTGCTCTGCCTCCAGCATCTCTTCAGCCAGCAGCACTCTGGAGAGAGAAGAAAGAGAGGAGAAACATGTCAGTGACAGCAACTCAG
Seq C2 exon
GTCAATGGGCAGACTGTATAAATACAGCAGACAACAACGATCAGTGCAACAAAGTTCTTAACAGCAAACGTTTCATGCTGGACATGCTGTATGCCCAAAACAAGGAAGGAGAGGAAGATGAGAAAGAAAAGGAGAACGAAAATGAGAAATGTTTAGGTCAGGACTCTACTGTGACAAGCCTTGCTAGCCGAATTTCCACTCTGGAATCACATCGGCAGACATGTGAGGACAACTTGAAGAAACTGGAAGTGGAGCATCTGGAAAACCAGGGCAGCGTGCGGGCTGTAGCTGAGAAATTTGGAGATTTGGTCAAAGGCATGTTATCACCTCATGACTTGGAGAATTGTGGGAAGGAAAAGCAGCAAACACAGGAAAAGCCTCCACCTGCTCCATCACCAGCACCCCCAAAAAAGGAGTCGGACCACATATGGGACCAGCTAATGGCAACGCCACGGGAGCTTCGTATCAAAGAGCTGGATTTCACAGACTTGGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904-'20-24,'20-21,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(17.2=21.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAAAGGGAACGGCCGAG
R:
ATTCGGCTAGCAAGGCTTGTC
Band lengths:
345-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]