GgaEX6020757 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85654740-85666105:+
Coord C1 exon
chr2:85654740-85654790
Coord A exon
chr2:85658815-85659029
Coord C2 exon
chr2:85665839-85666105
Length
215 bp
Sequences
Splice sites
3' ss Seq
CTTTGGAATTTAACTTTCAGATA
3' ss Score
8.57
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CCGTGATTATTTAGACAAAAGAGAAGAACTAAGACAAGCAAGAGAAGAGAG
Seq A exon
ATACAAATACTTGGAGAGATTGGCAGCCGAGGAGTATGAGAAGGAGCTGAAGAGTCGAAGTGTAAGCCGAGGCAGAAGTGAGCTGTCCTTGAACCTGAGATCTCCTTCAGCCCCATCCTCACCTGTACCCAAGTGCGTCAGCCCAGCATCCATAGAGTCCCAGGAAGAGCTGAAGACCCCCTCTACCCCCTGTGGAACTCCTCAGCACTCAGAAG
Seq C2 exon
CAGAAGCAGAGCAGGAGACTGAGGCAGAGCCTGAGCAGGGAACGGAGACACCCAAGGAAATAGAGGCTACAGAGGTGGGACCAGAGAGTGAGGTGGAGCAAGGACCAGAGAGAGAGCCAGAAGAAAGTGCAATACTCAGTGAAAAAGAGAGGCAGAATGAGGAAGTGAATGAAAAAGACAACTGCTCTGCATCCAGCATATCCTCAGCAAGCAGCACTTTAGAGAGGGAAGAGAGAGAGGACAAGTTAACCAGTGACAATGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'18-24,'18-22,19-24=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.979 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGAGAAGAACTAAGACAAGCA
R:
TGTCACTGGTTAACTTGTCCTCT
Band lengths:
295-510
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003100; ELM sequence: RADLSLDLT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]