HsaEX6038705 @ hg19
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:34267091-34289354:+
Coord C1 exon
chr18:34267091-34267141
Coord A exon
chr18:34273172-34273386
Coord C2 exon
chr18:34289058-34289354
Length
215 bp
Sequences
Splice sites
3' ss Seq
CTTTGGAATTTAACTTTCAGATA
3' ss Score
8.57
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCGAGATTATTTAGACAAAAGAGAGGAGCAAAGGCAAGCAAGAGAAGAAAG
Seq A exon
ATACAAATACTTGGAACAGTTGGCAGCTGAGGAGCACGAGAAGGAGCTGAGAAGCCGGAGTGTGAGCCGGGGCAGAGCCGACCTCTCCTTGGACCTGACCTCGCCAGCAGCCCCAGCCTGCCTGGCTCCTCTGAGCCATAGCCCCTCATCTTCAGACTCTCAAGAGGCTCTCACGGTGTCTGCCTCCTCCCCAGGAACCCCTCACCATCCCCAAG
Seq C2 exon
CAAGTGCCGGGGATCCTGAACCCGAATCAGAGGCAGAACCGGAAGCAGAGGCAGGGGCGGGGCAGGTTGCTGATGAAGCTGGCCAGGACATAGCCTCTGCCCACGAGGGTGCAGAGACTGAAGTGGAGCAGGCACTAGAGCAAGAGCCGGAAGAAAGAGCCTCCCTCAGTGAAAAAGAGAGGCAGAACGAGGGGGTGAACGAGAGGGACAACTGCTCTGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAGGGAGGAGAAGGAGGACAAGCTCTCCAGGGACAGGACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775-'18-17,'18-16,19-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGGAGCAAAGGCAAGC
R:
CTTCTCCTCCCTCTCCAACGT
Band lengths:
299-514
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003100; ELM sequence: RADLSLDLT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)