DreEX6040367 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18846814-18862902:-
Coord C1 exon
chr16:18862852-18862902
Coord A exon
chr16:18854313-18854497
Coord C2 exon
chr16:18846814-18847305
Length
185 bp
Sequences
Splice sites
3' ss Seq
GTTTTATGTGGTATATTCAGATA
3' ss Score
5.89
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCGGGATTATGCAGACAAGAGAGAAGAGGTCAGACATGCCCGTGAAGAAAG
Seq A exon
ATACAAGCAAGTGGAGCGTCTGACAGCAGAGGAAAAAGAAAGGGAACGGCCGAGAACACGTGGTAGAACAGAAATCACCCTCAGTCTGAGTTCACGCACTTCCAGCAGCTCCTTGTCTCGTTCCGTCACCCCTTTGACTGTAGATGCTCAAGAGGAGACACGCCCTGTCTCACATACAGCACAAG
Seq C2 exon
GAACTGTGACTGAGAAAAGTTGTACGGTGCAGACAGCAGTTGTGCGTTCTTTATCAGAACCTCCCTCTGCATCTCCACCAGTGTCCCCATCGCAACCAGAGGAGCAACAGAGACCTGTCGACCCATCCGACATCATTCTATCTCTATCTCCAACAAACTCTGAACCAGAAAGAACAGAGAAAGGGGAGAAAAAAGAGGATGCTGAAGCAGAGGAGTGTGAGGAAACAGTGGTGGGTGAAGTGCAAGATGAAAAGAAGGAAGAACCAGAAGGAAACTTTGAGGATGAGACTAATGTGACGGGTGCAGAAGACTGTGAGAGGGAGAAGACGTTGGATAGAGAAGTAGAGGAGAGTGCCATCCTAAGTGAAAAGGAGAAGCAGAATGAAGAACTGAATGAGAAAGATAACTGCTCTGCCTCCAGCATCTCTTCAGCCAGCAGCACTCTGGAGAGAGAAGAAAGAGAGGAGAAACATGTCAGTGACAGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGACATGCCCGTGAAGAA
R:
CCCACCACTGTTTCCTCACAC
Band lengths:
258-443
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003100; ELM sequence: RADLSLDLT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]