BtaEX0014635 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20729364-20752617:-
Coord C1 exon
chr24:20752567-20752617
Coord A exon
chr24:20745594-20745808
Coord C2 exon
chr24:20729364-20729654
Length
215 bp
Sequences
Splice sites
3' ss Seq
CTTTGGAATTTAACTTTCAGATA
3' ss Score
8.57
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCGAGAGTATTTAGACAAAAGAGAAGAACAGAGACAAGCAAGAGAAGAAAG
Seq A exon
ATACAAATACTTGGAGCAGTTGGCAGCTGAGGCGCATGAGAAGGAGCTGAGAAGCCGGAGTGCGAGCCGGGGCAGAGCTGACCTCTCCTTGGACCTGACCTCACCGGCAGCCCCCGCCTCCCCCGCCCCCCTGGGTCGTAGCCCTTCATCTCTAGACTCGCAGGAGGTTCCCACGGTATCATCCTCCTCCCCAGGAACGCCTCAGCATCCCCAAG
Seq C2 exon
CCAGCGCCGGGGAGCCTGGGCCTGAACCGGAGGCAGACGTGGAGGCAGAGGTGGGGCAGGTGGCCGATGAGGCCGGCCAGGAGCTAGCCCCTGCCAGCGCGGGAGCAGAGAGCGAGGTGGAGCGGGCCCTGGAGCCCGAGCACGAGGAGCGAGCCTCCCTGAGCGAGAAGGAGCGGCAGAATGAGGCAGTGAATGAGCGTGACAACTGCTCGGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAGGGAGGACAGGGAGGACAAGCTCTCCCGGGACAAGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'25-26,'25-25,27-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAGAGACAAGCAAGAGAAGA
R:
GAGCTTGTCCTCCCTGTCCTC
Band lengths:
299-514
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003100; ELM sequence: RADLSLDLT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development