BtaEX0014645 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20745594-20757795:-
Coord C1 exon
chr24:20757661-20757795
Coord A exon
chr24:20752567-20752617
Coord C2 exon
chr24:20745594-20745808
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTTTTGCATACTTCCATTAGCCG
3' ss Score
1.62
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTCATCAGTGAGTGGTCTTCTCACGTCATCCTTTAGACAGCACCAAGAGTCCTTGGCAGCAGAGAGAGAGAGGCGGCGACAGGAGAGAGAGGAAAGGTTGCAGAGAATAGAACGAGAGGAAAGAAACAAATTCAG
Seq A exon
CCGAGAGTATTTAGACAAAAGAGAAGAACAGAGACAAGCAAGAGAAGAAAG
Seq C2 exon
ATACAAATACTTGGAGCAGTTGGCAGCTGAGGCGCATGAGAAGGAGCTGAGAAGCCGGAGTGCGAGCCGGGGCAGAGCTGACCTCTCCTTGGACCTGACCTCACCGGCAGCCCCCGCCTCCCCCGCCCCCCTGGGTCGTAGCCCTTCATCTCTAGACTCGCAGGAGGTTCCCACGGTATCATCCTCCTCCCCAGGAACGCCTCAGCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGTCCTTGGCAGCAGAG
R:
TTCTCAGCTCCTTCTCATGCG
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development