RnoEX0036010 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17254724-17264715:+
Coord C1 exon
chr18:17254724-17254858
Coord A exon
chr18:17258815-17258865
Coord C2 exon
chr18:17264504-17264715
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTGCTTTTTCACCAGCCG
3' ss Score
7.15
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTCATCGCCAAGTGGCCTTCTCACATCCTCCTTTAGACAGCACCAAGAGTCACTGGCAGCGGAGAGAGAGCGGAGGCGGCAAGAGAGAGAAGAAAGACTGCAGAGGATAGAACGGGAAGAAAGGAACAAATTCAA
Seq A exon
CCGGGAGTATCTAGACAAAAGGGAGGAGCAAAGGCAAGCGAGAGGAGAAAG
Seq C2 exon
ATACAAATACTTGGAGCACTTGGCAGCCGAGGCGCACGAGAAGGAGCAGAGAAGCCGGAGCGCGAGCCGGGGCAGAGCTGACCTCTCCTTGGACCTGAGCTTGCCAGCAGCCCCTGCCTCACCTTCCCCATCAAGCCCGAGTCCTGACTCTGCTGACTCACAAGAGGCTCTCACGGTGCCCTCAACCCCACCCACCCTGCAGTACCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'43-38,'43-37,45-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000041961fB5561
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGAGGATAGAACGGGA
R:
GTCCAAGGAGAGGTCAGCTCT
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]