DreEX0032785 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:748798-749755:+
Coord C1 exon
chr19:748798-748932
Coord A exon
chr19:749021-749071
Coord C2 exon
chr19:749580-749755
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGTCG
3' ss Score
8.02
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ACCGGCTCTGGGTGGGCTGCTGTCCTCCTCATACCGTCAGCATCAGGAGTCTCTGGCGGCCGAGAGAGAGAAGAGACGAGTGCAGCGAGAGGAGCGACTGCAGAGGATCGAGAGAGAGGAGAGAAACAGACACAG
Seq A exon
TCGAGACTATGTGTCCAACATGGAGGAGGCCAGACATGCTCGAGAGGAGAG
Seq C2 exon
GTTTAAGACAGCGGAGCGTCTGGCAGCGGAGGAGTTCGAGAGAGAGCGGCAGCGTTCAGCACCTCGAGGACTCCCAACAGACACCTGTCAATCATCCCGCAGTGCCACGCCCTCCTCAGTGACATCACAGGAAGAGCAGGACACGCCCATCGCATCGTACCCGCCCTCTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682-'14-21,'14-20,15-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCTCATACCGTCAGCA
R:
AGACGCTCCGCTGTCTTAAAC
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]