HsaEX0025777 @ hg19
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:34261399-34273386:+
Coord C1 exon
chr18:34261399-34261533
Coord A exon
chr18:34267091-34267141
Coord C2 exon
chr18:34273172-34273386
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTTCTACATATTTCCATTAGCCG
3' ss Score
2.57
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTCATCACCGAGTGGTCTTCTCACATCATCCTTCAGGCAGCACCAAGAGTCACTGGCAGCAGAGAGAGAGAGGCGGCGGCAGGAGAGAGAAGAAAGGTTGCAGAGAATAGAGCGGGAAGAAAGAAACAAATTCAG
Seq A exon
CCGAGATTATTTAGACAAAAGAGAGGAGCAAAGGCAAGCAAGAGAAGAAAG
Seq C2 exon
ATACAAATACTTGGAACAGTTGGCAGCTGAGGAGCACGAGAAGGAGCTGAGAAGCCGGAGTGTGAGCCGGGGCAGAGCCGACCTCTCCTTGGACCTGACCTCGCCAGCAGCCCCAGCCTGCCTGGCTCCTCTGAGCCATAGCCCCTCATCTTCAGACTCTCAAGAGGCTCTCACGGTGTCTGCCTCCTCCCCAGGAACCCCTCACCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.997 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCAGCAGAGAGAGAGAG
R:
TTCTCAGCTCCTTCTCGTGCT
Band lengths:
137-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)