DreEX0032800 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18854313-18864518:-
Coord C1 exon
chr16:18864384-18864518
Coord A exon
chr16:18862852-18862902
Coord C2 exon
chr16:18854313-18854497
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTTCTTTACTGTAGTCG
3' ss Score
6.93
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCCAACTCTGGGTGGATTGTTGACCTCCTCCTACAGGCAGCACCAAGAATCTCTGAACGCTGAAAGAGAGCGGAGACGTCTGGAGAGAGAAGAGAGACTTCAACGGATTGAAAGAGAGGAGAGAAACCGCTTCAA
Seq A exon
TCGGGATTATGCAGACAAGAGAGAAGAGGTCAGACATGCCCGTGAAGAAAG
Seq C2 exon
ATACAAGCAAGTGGAGCGTCTGACAGCAGAGGAAAAAGAAAGGGAACGGCCGAGAACACGTGGTAGAACAGAAATCACCCTCAGTCTGAGTTCACGCACTTCCAGCAGCTCCTTGTCTCGTTCCGTCACCCCTTTGACTGTAGATGCTCAAGAGGAGACACGCCCTGTCTCACATACAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904-'18-20,'18-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCTCCTCCTACAGGCAG
R:
CAGACGCTCCACTTGCTTGTA
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]