GgaEX0019787 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85650721-85659029:+
Coord C1 exon
chr2:85650721-85650855
Coord A exon
chr2:85654740-85654790
Coord C2 exon
chr2:85658815-85659029
Length
51 bp
Sequences
Splice sites
3' ss Seq
TACTGCAATTTTTTTTTTAGCCG
3' ss Score
5.91
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GCCTGCTTTGGGTGGTCTTCTTACATCATCTTTCCGGCAGCACCAGGAGTCCTTGGCAGCAGAAAGAGAAAGACGGCGCCAAGAGAGAGAAGAAAGGTTGCAGAGGATAGAACGTGAAGAAAGAAACAAATTCAA
Seq A exon
CCGTGATTATTTAGACAAAAGAGAAGAACTAAGACAAGCAAGAGAAGAGAG
Seq C2 exon
ATACAAATACTTGGAGAGATTGGCAGCCGAGGAGTATGAGAAGGAGCTGAAGAGTCGAAGTGTAAGCCGAGGCAGAAGTGAGCTGTCCTTGAACCTGAGATCTCCTTCAGCCCCATCCTCACCTGTACCCAAGTGCGTCAGCCCAGCATCCATAGAGTCCCAGGAAGAGCTGAAGACCCCCTCTACCCCCTGTGGAACTCCTCAGCACTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=1.000 C2=0.979
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCTTGGCAGCAGAAAG
R:
TTCTCATACTCCTCGGCTGCC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]