GgaEX0019787 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83389593-83397901:+
Coord C1 exon
chr2:83389593-83389727
Coord A exon
chr2:83393612-83393662
Coord C2 exon
chr2:83397687-83397901
Length
51 bp
Sequences
Splice sites
3' ss Seq
TACTGCAATTTTTTTTTTAGCCG
3' ss Score
5.91
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GCCTGCTTTGGGTGGTCTTCTTACATCATCTTTCCGGCAGCACCAGGAGTCCTTGGCAGCAGAAAGAGAAAGACGGCGCCAAGAGAGAGAAGAAAGGTTGCAGAGGATAGAACGTGAAGAAAGAAACAAATTCAA
Seq A exon
CCGTGATTATTTAGACAAAAGAGAAGAACTAAGACAAGCAAGAGAAGAGAG
Seq C2 exon
ATACAAATACTTGGAGAGATTGGCAGCCGAGGAGTATGAGAAGGAGCTGAAGAGTCGAAGTGTAAGCCGAGGCAGAAGTGAGCTGTCCTTGAACCTGAGATCTCCTTCAGCCCCATCCTCACCTGTACCCAAGTGCGTCAGCCCAGCATCCATAGAGTCCCAGGAAGAGCTGAAGACCCCCTCTACCCCCTGTGGAACTCCTCAGCACTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCTTGGCAGCAGAAAG
R:
TTCTCATACTCCTCGGCTGCC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]