MmuEX0019233 @ mm9
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25214761-25224926:+
Coord C1 exon
chr18:25214761-25214895
Coord A exon
chr18:25218827-25218877
Coord C2 exon
chr18:25224718-25224926
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTGCTTCCCCTCCAGCCG
3' ss Score
8.93
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTCATCGCCAAGTGGCCTTCTCACATCCTCGTTCAGGCAGCACCAAGAGTCACTGGCAGCAGAGAGAGAGCGGAGGCGGCAAGAGAGAGAGGAAAGACTGCAGAGGATAGAACGGGAAGAAAGGAACAAATTCAA
Seq A exon
CCGGGAATATCTAGACAAAAGGGAGGAGCAAAGGCAAGCAAGAGGAGAAAG
Seq C2 exon
ATACAAATACTTGGAGCAGTTGGCAGCCGAGACGCAGGAGAAGGAGCCTAGAAGCCAGAGCGTGAGCCGGGGTAGAGCTGACCTCTCCTTGGACCTGAGCTTGCCTGCAGCCCCTGCTCCACCTTCCCCTTCAAGCCAGAGTCCCTCTGCTGACTCACAAGAGGCTCTCCCTGTGCCTTCATCCCCACCCACTCTGCAGTGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTCACTGGCAGCAGAGA
R:
TGGCTTCTAGGCTCCTTCTCC
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: