DreEX6071295 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:749021-752523:+
Coord C1 exon
chr19:749021-749071
Coord A exon
chr19:749580-749755
Coord C2 exon
chr19:752176-752523
Length
176 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTGTGTGTGTGTCAGGTT
3' ss Score
10.26
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TCGAGACTATGTGTCCAACATGGAGGAGGCCAGACATGCTCGAGAGGAGAG
Seq A exon
GTTTAAGACAGCGGAGCGTCTGGCAGCGGAGGAGTTCGAGAGAGAGCGGCAGCGTTCAGCACCTCGAGGACTCCCAACAGACACCTGTCAATCATCCCGCAGTGCCACGCCCTCCTCAGTGACATCACAGGAAGAGCAGGACACGCCCATCGCATCGTACCCGCCCTCTGAACCAG
Seq C2 exon
ACACTAATGATCTAGAACCGGAAGCAGAGGCTGATCTAGAACCCGAGGAGAAAAAGCCCACAGAAGAAGCAGAGGAGGAAGTAGAAGAGGAAGTAGAGGAGGAAGTAGAAGAGGGAGTGAGTGCTGAACCGGAAGTGAGCGCAGCTGAGGAACAGGTGGCAGAGGAGGAGGAGGAGTCTGAGCGGGAAGCGCCGGATGGAGAAGCGGAGGACAGTGGAATACTGAGCGATAAAGAGCGACAGAATGAAGAAGTGAACGAGAAAGACAACTGCTCTGCGTCCAGCATATCCTCCGCCAGCAGCACGCTAGAGAGAGAAGATCGACTCAATGCAGGCGCCGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682-'15-22,'15-21,16-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACATGCTCGAGAGGAGA
R:
ATTCCACTGTCCTCCGCTTCT
Band lengths:
242-418
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003100; ELM sequence: RADLSLDLT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]