MmuEX6000630 @ mm10
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25060326-25085612:+
Coord C1 exon
chr18:25060326-25060376
Coord A exon
chr18:25066217-25066425
Coord C2 exon
chr18:25085334-25085612
Length
209 bp
Sequences
Splice sites
3' ss Seq
CTTTGGAATTTAACTTTCAGATA
3' ss Score
8.57
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCGGGAATATCTAGACAAAAGGGAGGAGCAAAGGCAAGCAAGAGGAGAAAG
Seq A exon
ATACAAATACTTGGAGCAGTTGGCAGCCGAGACGCAGGAGAAGGAGCCTAGAAGCCAGAGCGTGAGCCGGGGTAGAGCTGACCTCTCCTTGGACCTGAGCTTGCCTGCAGCCCCTGCTCCACCTTCCCCTTCAAGCCAGAGTCCCTCTGCTGACTCACAAGAGGCTCTCCCTGTGCCTTCATCCCCACCCACTCTGCAGTGCCCCCAAG
Seq C2 exon
TAAGTGGTAAGGACCACGAGCCTGAACTGGAGGCAGAAGCTGGGCAAGGTGCTGATGAAGCCAGCCAGGATATAGCATCTGCCCACAGGGGAGCAGAGAGCCAAGAAGAGCCGGTGCTGGAGCTAGAGCCAGAGGAAAGAGCTTCACTGAGTGAAAAAGAGAGGCAAAACGAAGAGGTGAATGAGAGGGACAACTGTTCTGCTTCCAGCATCTCGTCCTCCAGCAGCACCTTGGAGAGGGAAGAGAAGGAAGACAAACTGTCTGAAGACAGGGCGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-'24-26,'24-24,29-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGGGAGGAGCAAAGGC
R:
TGTCTTCCTTCTCTTCCCTCTCC
Band lengths:
292-501
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003100; ELM sequence: RADLSLDLT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types