RnoEX0036011 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17258815-17282280:+
Coord C1 exon
chr18:17258815-17258865
Coord A exon
chr18:17264504-17264715
Coord C2 exon
chr18:17282002-17282280
Length
212 bp
Sequences
Splice sites
3' ss Seq
CTTTGGAATTTAACTTTCAGATA
3' ss Score
8.57
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCGGGAGTATCTAGACAAAAGGGAGGAGCAAAGGCAAGCGAGAGGAGAAAG
Seq A exon
ATACAAATACTTGGAGCACTTGGCAGCCGAGGCGCACGAGAAGGAGCAGAGAAGCCGGAGCGCGAGCCGGGGCAGAGCTGACCTCTCCTTGGACCTGAGCTTGCCAGCAGCCCCTGCCTCACCTTCCCCATCAAGCCCGAGTCCTGACTCTGCTGACTCACAAGAGGCTCTCACGGTGCCCTCAACCCCACCCACCCTGCAGTACCCACAAG
Seq C2 exon
TAAGTGGTAAGGACCGAGAGCCTGAACTGGAGGCGGAAGCTGGGCAGGGTGCTGATGAAGCCAGCCGGGACATAGCGTCTGCCCACAGGGAAGCAGGAAGCCAAGAAGAGCCAGCGCTGGAGCTAGAGCCTGAGGAAAGAGCGTCACTGAGTGAGAAAGAGAGGCAAAACGAAGAGGTGAATGAGAGGGACAACTGTTCTGCCTCCAGCATCTCGTCCTCCAGCAGCACCTTGGAGAGGGAAGAGAAGGAGGACAAACTGTCTGGAGACAGACCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'45-40,'45-38,48-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGGGAGGAGCAAAGGC
R:
TGTCCTCCTTCTCTTCCCTCTC
Band lengths:
292-504
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: protein array. ELM ID: ELMI003100; ELM sequence: RADLSLDLT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]