BtaEX6091669 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021923 | DSG2
Description
Bos taurus desmoglein 2 (DSG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192172]
Coordinates
chr24:25919440-25925205:-
Coord C1 exon
chr24:25924978-25925205
Coord A exon
chr24:25921317-25921544
Coord C2 exon
chr24:25919440-25919561
Length
228 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTTGTCCCTTACAGATA
3' ss Score
11.49
5' ss Seq
TACGTAAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AATATCCTAGAAAAACCATCACTGGCACTATTGTTATCAATGTTGAAGATGTCAATGACAATTGTCCCACACTGGTCGAACCTGTGCAGACTGTCTGTGACTATGTGCCGTTCGTGAACGTGACCGCTCAGGACCTGGACGGACCCCAAAACAGCTGGCCTTTCAGTTTCTCCATCATTGATAAACCAGCTGGAATGGCAGAAAGATGGAAAATAGTACGCCGAGAAG
Seq A exon
ATAACAACGTGCTACTACAACAAACCAAAAGACAGCATGGGACAAGTGAAATTCACTTCCAGATCGCAGATAGTCAAGGCTTCAGCTGTCCTGAAGAGCAGATCCTTAGGCTCACAGTTTGCAATTGTGTGGAAGGCAGCGGCTGTGTGAATATGTGGGCTGACTCCTACGTTGGCTTGGGGCCTGCAGCAATTGCACTCATAATTCTTGCCCTTCTGCTCTTGCTAC
Seq C2 exon
TTATACCACTTCTGCTGCTGGTGTGCCATTGTGGAAAGGGCGCCAAAGGCTTTACCCCCATCCCGGGTACCATAGAGATGCTGCATCCATGGAACAACGAGGGGGCGCCACCTGAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021923-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.220
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(15.8=19.5),PF079068=Toxin_15=PD(16.9=16.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTGTCCCACACTGGTCG
R:
CTTGTCTTCAGGTGGCGCC
Band lengths:
293-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]