RnoEX0029968 @ rn6
Exon Skipping
Gene
ENSRNOG00000016526 | Dsg2
Description
desmoglein 2 [Source:RGD Symbol;Acc:1311143]
Coordinates
chr18:15594514-15598773:-
Coord C1 exon
chr18:15598546-15598773
Coord A exon
chr18:15596202-15596429
Coord C2 exon
chr18:15594514-15594635
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTGCGTCTCCTCTCTGGCAGGTA
3' ss Score
10.54
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTCACCCTCAAAAAACCGTCACTGGCACCATCCTTATCAATGTTGAAGACGTCAATGACAACTGTCCCGTACTGGTGGACTCAGTACGGAGTGTCTGTGCGGATGCACCGTATGTGAACGTCACTGCGGAAGACTTGGATGGACCCCGGAACAGTGGGCCATTCACCTTCTCCATCATTGACCAGCCTCCCGGAACGGCACAGAAGTGGAAAATCACGCACCAAGAAA
Seq A exon
GTACCAGTGTGCTGCTGCAGCCAAGCGAGCGGAAGCTTGGGAGAAGTGAGATTCCCTTCCTCATCTCCGACAGCCAGGGTTTCAGCTGCCTGGAGAGGCAAGTCCTCCAGCTCACCGTGTGCGAGTGTCTGGAGGGCGGTGGCTGTGTGGCTGCGCTGTATGACAACTACGTCGGTTTGGGCCCCGCCGCGATCGCCCTCATGATTCTGGCTCTCCTGCTTCTGCTGC
Seq C2 exon
TGGTGCCGCTCTTGTTGTTGATGTGCCACTGTGGAGAGGGCGCCAAAGGCTTCGCCCCCATTCCCGGGACCATAGAGATGCTGCATCCTTGGAACAATGAAGGGGCACCACCCGAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016526-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.013 C2=0.244
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(16.0=19.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACCGTCACTGGCACCAT
R:
TCTCTATGGTCCCGGGAATGG
Band lengths:
296-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]